PH01000246G0100's details annotation
1.Annotation
ICBR annotation: AMP-binding enzyme family protein, expressed
Blast result AT5G35930 : 3.00E-30
Blast annotation: AMP-dependent synthetase and ligase family protein
2.Location
Scaffold: PH01000246
Strand: +
| Region | Start | End |
| gene | 59518 | 62826 |
| mRNA | 59518 | 62826 |
| exon | 59518 | 59862 |
| exon | 60508 | 60835 |
| exon | 61654 | 61773 |
| exon | 61857 | 62115 |
| exon | 62194 | 62826 |
| CDS | 59750 | 59862 |
| CDS | 60508 | 60835 |
| CDS | 61654 | 61773 |
| CDS | 61857 | 62115 |
| CDS | 62194 | 62681 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 286 | 415 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.