Annotation of co-expression genes

PH01000246G0190's details annotation

1.Annotation

ICBR annotation: defender against cell death 1, putative, expressed

Blast result AT1G32210 : 9.20E-48
Blast annotation: Defender against death (DAD family) protein

2.Location

Scaffold: PH01000246
Strand: -

RegionStartEnd
gene111552113991
mRNA111552113991
exon111552112573
exon112659112702
exon112781112868
exon113290113390
exon113688113739
exon113840113991
CDS112490112573
CDS112659112702
CDS112781112868
CDS113290113390
CDS113688113739
CDS113840113920

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02109.15DAD12114

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
N-Glycan biosynthesisoligosaccharyltransferase complex subunit epsilonko00510K12668
Various types of N-glycan biosynthesisoligosaccharyltransferase complex subunit epsilonko00513K12668
Protein processing in endoplasmic reticulumoligosaccharyltransferase complex subunit epsilonko04141K12668

10.Gene Ontology

GO AccessionGO Annotation
GO:0004579dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0008250oligosaccharyltransferase complex
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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