PH01000246G0420's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT4G17720 : 3.40E-82
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000246
Strand: +
| Region | Start | End |
| gene | 270150 | 276141 |
| mRNA | 270150 | 276141 |
| exon | 270150 | 270860 |
| exon | 270915 | 271025 |
| exon | 271583 | 271606 |
| exon | 272636 | 272739 |
| exon | 272847 | 272922 |
| exon | 273390 | 273473 |
| exon | 274144 | 276141 |
| CDS | 270810 | 270860 |
| CDS | 270915 | 271025 |
| CDS | 271583 | 271606 |
| CDS | 272636 | 272739 |
| CDS | 272847 | 272922 |
| CDS | 273390 | 273473 |
| CDS | 274144 | 274644 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 22 | 81 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.