PH01000252G0950's details annotation
1.Annotation
ICBR annotation: histidine-containing phosphotransfer protein, putative, expressed
Blast result AT3G16360 : 6.30E-30
Blast annotation: HPT phosphotransmitter 4
2.Location
Scaffold: PH01000252
Strand: +
| Region | Start | End |
| gene | 710814 | 712413 |
| mRNA | 710814 | 712413 |
| exon | 710814 | 710978 |
| exon | 711379 | 711509 |
| exon | 711642 | 711710 |
| exon | 712253 | 712413 |
| CDS | 710868 | 710978 |
| CDS | 711379 | 711509 |
| CDS | 711642 | 711710 |
| CDS | 712253 | 712358 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01627.22 | Hpt | 61 | 130 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | histidine-containing phosphotransfer peotein | ko04075 | K14490 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0004871 | signal transducer activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.