PH01000253G1010's details annotation
1.Annotation
ICBR annotation: FYVE zinc finger domain containing protein, expressed
Blast result AT1G29800 : 3.60E-75
Blast annotation: RING/FYVE/PHD-type zinc finger family protein
2.Location
Scaffold: PH01000253
Strand: -
| Region | Start | End |
| gene | 656474 | 662631 |
| mRNA | 656474 | 662631 |
| exon | 656474 | 657674 |
| exon | 658896 | 659097 |
| exon | 659198 | 659398 |
| exon | 660711 | 660808 |
| exon | 661033 | 662631 |
| CDS | 657493 | 657674 |
| CDS | 658896 | 659097 |
| CDS | 659198 | 659398 |
| CDS | 660711 | 660808 |
| CDS | 661033 | 661531 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001173 | HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04366.11 | Ysc84 | 260 | 386 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.