Annotation of co-expression genes

PH01000254G0150's details annotation

1.Annotation

ICBR annotation: EMB2744, putative, expressed

Blast result AT5G39680 : 1.00E-158
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein

2.Location

Scaffold: PH01000254
Strand: -

RegionStartEnd
gene101828110045
mRNA101828110045
exon101828102344
exon102825102961
exon103265103363
exon103731103819
exon103940104027
exon104067106278
exon106341106407
exon106576106960
exon107462107589
exon108278108632
exon109657110045
CDS101978102344
CDS102825102961
CDS103265103363
CDS103731103819
CDS103940104027
CDS104067106278
CDS106341106407
CDS106576106960
CDS107462107589
CDS108278108632
CDS109657109716

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01535.19PPR444470
PF01535.19PPR475495
PF01535.19PPR540562
PF01535.19PPR571597
PF13041.5PPR_2668716
PF01535.19PPR743767
PF13041.5PPR_2770817
PF01535.19PPR844864
PF01535.19PPR910939
PF14432.5DYW_deaminase9431066

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.