PH01000258G0070's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed
Blast result AT5G18580 : 0.00E+00
Blast annotation: tonneau 2 (TON2)
2.Location
Scaffold: PH01000258
Strand: -
| Region | Start | End |
| gene | 24871 | 33013 |
| mRNA | 24871 | 33013 |
| exon | 24871 | 25891 |
| exon | 27435 | 27627 |
| exon | 27814 | 27915 |
| exon | 28067 | 28142 |
| exon | 29852 | 29916 |
| exon | 29993 | 30125 |
| exon | 30201 | 30272 |
| exon | 30864 | 31022 |
| exon | 31378 | 31476 |
| exon | 31599 | 31661 |
| exon | 31891 | 31982 |
| exon | 32692 | 33013 |
| CDS | 25651 | 25891 |
| CDS | 27435 | 27627 |
| CDS | 27814 | 27915 |
| CDS | 28067 | 28142 |
| CDS | 29852 | 29916 |
| CDS | 29993 | 30125 |
| CDS | 30201 | 30272 |
| CDS | 30864 | 31022 |
| CDS | 31378 | 31476 |
| CDS | 31599 | 31661 |
| CDS | 31891 | 31982 |
| CDS | 32692 | 32848 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 302 | 404 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), regulatory subunit B'' | ko03015 | K11583 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.