PH01000258G0670's details annotation
1.Annotation
ICBR annotation: sucrose-phosphatase, putative, expressed
Blast result AT2G35840 : 2.00E-107
Blast annotation: Sucrose-6F-phosphate phosphohydrolase family protein
2.Location
Scaffold: PH01000258
Strand: -
| Region | Start | End |
| gene | 442114 | 445019 |
| mRNA | 442114 | 445019 |
| exon | 442114 | 442206 |
| exon | 443569 | 443856 |
| exon | 443956 | 444150 |
| exon | 444271 | 444372 |
| exon | 444517 | 444774 |
| exon | 444880 | 445019 |
| CDS | 442132 | 442206 |
| CDS | 443569 | 443856 |
| CDS | 443956 | 444150 |
| CDS | 444271 | 444372 |
| CDS | 444517 | 444774 |
| CDS | 444880 | 444981 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05116.12 | S6PP | 23 | 261 |
| PF08472.9 | S6PP_C | 262 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000287 | magnesium ion binding |
| GO:0003824 | catalytic activity |
| GO:0005986 | sucrose biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0016791 | phosphatase activity |
| GO:0050307 | sucrose-phosphate phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.