PH01000258G0820's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G06010 : 1.00E-145
Blast annotation: Homeotic gene regulator
2.Location
Scaffold: PH01000258
Strand: +
| Region | Start | End |
| gene | 541899 | 544452 |
| mRNA | 541899 | 544452 |
| exon | 541899 | 542264 |
| exon | 542536 | 543135 |
| exon | 543265 | 544452 |
| CDS | 542198 | 542264 |
| CDS | 542536 | 543135 |
| CDS | 543265 | 543932 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000403 | GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000971 | C3H Transcription_Regulator(from PlantTFDB) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 64 | 177 |
| PF14619.5 | SnAC | 268 | 332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.