PH01000258G1050's details annotation
1.Annotation
ICBR annotation: GA20663-PA, putative, expressed
Blast result AT5G27410 : 3.00E-50
Blast annotation: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
2.Location
Scaffold: PH01000258
Strand: -
| Region | Start | End |
| gene | 741888 | 746568 |
| mRNA | 741888 | 746568 |
| exon | 741888 | 742057 |
| exon | 742112 | 742182 |
| exon | 743307 | 743423 |
| exon | 743708 | 743764 |
| exon | 744648 | 744732 |
| exon | 744832 | 744910 |
| exon | 744998 | 745067 |
| exon | 745151 | 745282 |
| exon | 745489 | 745558 |
| exon | 746119 | 746568 |
| CDS | 742045 | 742057 |
| CDS | 742112 | 742182 |
| CDS | 743307 | 743423 |
| CDS | 743708 | 743764 |
| CDS | 744648 | 744732 |
| CDS | 744832 | 744910 |
| CDS | 744998 | 745067 |
| CDS | 745151 | 745282 |
| CDS | 745489 | 745558 |
| CDS | 746119 | 746225 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10294.8 | Methyltransf_16 | 148 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.