PH01000259G0830's details annotation
1.Annotation
ICBR annotation: pumilio domain-containing protein PPD1, putative, expressed
Blast result AT2G19090 : 3.00E-109
Blast annotation: Protein of unknown function (DUF630 and DUF632)
2.Location
Scaffold: PH01000259
Strand: +
| Region | Start | End |
| gene | 549102 | 553752 |
| mRNA | 549102 | 553752 |
| exon | 549102 | 551258 |
| exon | 551343 | 551557 |
| exon | 551632 | 551855 |
| exon | 552548 | 553752 |
| CDS | 549986 | 551258 |
| CDS | 551343 | 551557 |
| CDS | 551632 | 551855 |
| CDS | 552548 | 553157 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04783.11 | DUF630 | 1 | 59 |
| PF04782.11 | DUF632 | 385 | 703 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.