PH01000261G0540's details annotation
1.Annotation
ICBR annotation: auxin efflux carrier component, putative, expressed
Blast result AT5G01990 : 1.00E-139
Blast annotation: Auxin efflux carrier family protein
2.Location
Scaffold: PH01000261
Strand: -
| Region | Start | End |
| gene | 291109 | 294641 |
| mRNA | 291109 | 294641 |
| exon | 291109 | 291863 |
| exon | 291964 | 292158 |
| exon | 292276 | 292328 |
| exon | 292424 | 292524 |
| exon | 292617 | 292691 |
| exon | 292816 | 293049 |
| exon | 293207 | 293328 |
| exon | 293428 | 293552 |
| exon | 294012 | 294091 |
| exon | 294248 | 294641 |
| CDS | 291742 | 291863 |
| CDS | 291964 | 292158 |
| CDS | 292276 | 292328 |
| CDS | 292424 | 292524 |
| CDS | 292617 | 292691 |
| CDS | 292816 | 293049 |
| CDS | 293207 | 293328 |
| CDS | 293428 | 293552 |
| CDS | 294012 | 294091 |
| CDS | 294248 | 294415 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03547.17 | Mem_trans | 22 | 416 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.