PH01000262G0320's details annotation
1.Annotation
ICBR annotation: protein transport protein Sec61 subunit beta, putative, expressed
Blast result AT5G60460 : 6.50E-17
Blast annotation: Preprotein translocase Sec, Sec61-beta subunit protein
2.Location
Scaffold: PH01000262
Strand: -
| Region | Start | End |
| gene | 210973 | 212541 |
| mRNA | 210973 | 212541 |
| exon | 210973 | 212541 |
| CDS | 211855 | 212160 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000448 | COPII vesicle coat, Protein_processing_in_endoplasmic_reticulum Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03911.15 | Sec61_beta | 56 | 95 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein export | protein transport protein SEC61 subunit beta | ko03060 | K09481 |
| Protein processing in endoplasmic reticulum | protein transport protein SEC61 subunit beta | ko04141 | K09481 |
| Phagosome | protein transport protein SEC61 subunit beta | ko04145 | K09481 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.