PH01000263G0980's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT1G34750 : 1.00E-104
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01000263
Strand: -
| Region | Start | End |
| gene | 645408 | 653391 |
| mRNA | 645408 | 653391 |
| exon | 645408 | 645643 |
| exon | 646304 | 646438 |
| exon | 646536 | 646690 |
| exon | 648355 | 648631 |
| exon | 648714 | 648956 |
| exon | 649563 | 649691 |
| exon | 650406 | 653391 |
| CDS | 645605 | 645643 |
| CDS | 646304 | 646438 |
| CDS | 646536 | 646690 |
| CDS | 648355 | 648631 |
| CDS | 648714 | 648956 |
| CDS | 649563 | 649691 |
| CDS | 650406 | 650735 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000583 | RLK-Pelle_LRR-Xa (from iTAK) protein phosphorylation, RLK-Pelle_RLCK-IXb (from iTAK) STE_STE11 (from iTAK) ubiquitin ligase complex, Endocytosis transferase activity, transferring phosphorus-containing groups, protein kinase activity, protein ubiquitination, response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 185 | 415 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.