Annotation of co-expression genes

PH01000264G0930's details annotation

1.Annotation

ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed

Blast result AT1G30620 : 0.00E+00
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein

2.Location

Scaffold: PH01000264
Strand: -

RegionStartEnd
gene691410695929
mRNA691410695929
exon691410692197
exon692506692650
exon692841692970
exon693053693147
exon693383693557
exon693810693901
exon694187694300
exon695371695929
CDS691971692197
CDS692506692650
CDS692841692970
CDS693053693147
CDS693383693557
CDS693810693901
CDS694187694300
CDS695371695493

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16363.4GDP_Man_Dehyd67382

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Amino sugar and nucleotide sugar metabolismUDP-arabinose 4-epimerase [EC:5.1.3.5]ko00520K12448

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0003978UDP-glucose 4-epimerase activity
GO:0006012galactose metabolic process
GO:0044237cellular metabolic process
GO:0050662coenzyme binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.