PH01000264G1150's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT1G13180 : 1.70E-74
Blast annotation: Actin-like ATPase superfamily protein
2.Location
Scaffold: PH01000264
Strand: +
| Region | Start | End |
| gene | 809619 | 813295 |
| mRNA | 809619 | 813295 |
| exon | 809619 | 810065 |
| exon | 810491 | 810527 |
| exon | 810733 | 810803 |
| exon | 810967 | 811201 |
| exon | 811296 | 811550 |
| exon | 812438 | 812549 |
| exon | 812793 | 813295 |
| CDS | 810019 | 810065 |
| CDS | 810491 | 810527 |
| CDS | 810733 | 810803 |
| CDS | 810967 | 811201 |
| CDS | 811296 | 811550 |
| CDS | 812438 | 812549 |
| CDS | 812793 | 812833 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000228 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, clathrin_coat ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) clathrin_coat_assembly response to hormone stimulus, 1-phosphatidylinositol_binding clathrin_binding |
| coexpression network | CFinderM000813 | Arp2/3_protein_complex Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, cytoskeleton, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 54 | 244 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0005856 | cytoskeleton |
| GO:0005885 | Arp2/3 protein complex |
| GO:0030833 | regulation of actin filament polymerization |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.