PH01000268G0820's details annotation
1.Annotation
ICBR annotation: hsp20/alpha crystallin family protein, putative, expressed
Blast result AT5G37670 : 1.60E-27
Blast annotation: HSP20-like chaperones superfamily protein
2.Location
Scaffold: PH01000268
Strand: +
| Region | Start | End |
| gene | 661630 | 662820 |
| mRNA | 661630 | 662820 |
| exon | 661630 | 662820 |
| CDS | 662190 | 662621 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000533 | MBF1 Transcription_Regulator(from iTAK) Protein_processing_in_endoplasmic_reticulum cytoplasm, RLK-Pelle_LRK10L-2 (from iTAK) protein metabolic process, protein refolding, response to heat, protein processing, RNA_degradation |
| coexpression network | CFinderM000602 | cysteine-type endopeptidase inhibitor activity, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00011.20 | HSP20 | 34 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | HSP20 family protein | ko04141 | K13993 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.