PH01000268G1110's details annotation
1.Annotation
ICBR annotation: ThiF family domain containing protein, putative, expressed
Blast result AT5G37530 : 1.50E-36
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000268
Strand: -
| Region | Start | End |
| gene | 842741 | 848538 |
| mRNA | 842741 | 848538 |
| exon | 842741 | 843262 |
| exon | 843858 | 843915 |
| exon | 844988 | 845112 |
| exon | 845724 | 845942 |
| exon | 846130 | 846198 |
| exon | 846548 | 846691 |
| exon | 846764 | 846797 |
| exon | 847120 | 847207 |
| exon | 847461 | 847519 |
| exon | 847623 | 848538 |
| CDS | 843152 | 843262 |
| CDS | 843858 | 843915 |
| CDS | 844988 | 845112 |
| CDS | 845724 | 845942 |
| CDS | 846130 | 846198 |
| CDS | 846548 | 846691 |
| CDS | 846764 | 846797 |
| CDS | 847120 | 847207 |
| CDS | 847461 | 847519 |
| CDS | 847623 | 847702 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000043 | C3H Transcription_Regulator(from PlantTFDB) DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00899.20 | ThiF | 97 | 135 |
| PF00899.20 | ThiF | 164 | 233 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.