Annotation of co-expression genes

PH01000271G0690's details annotation

1.Annotation

ICBR annotation: tRNAHis guanylyltransferase family protein, expressed

Blast result AT2G31580 : 3.00E-117
Blast annotation: tRNAHis guanylyltransferase

2.Location

Scaffold: PH01000271
Strand: -

RegionStartEnd
gene490925500687
mRNA490925500687
exon490925492086
exon492610492717
exon492816492901
exon493047493083
exon494036494121
exon494391494560
exon494643494687
exon495003495156
exon495427495556
exon496190496275
exon496514496683
exon496810496854
exon497144497275
exon497800497924
exon498758498844
exon499296499444
exon499483499550
exon500105500687
CDS491961492086
CDS492610492717
CDS492816492901
CDS493047493083
CDS494036494121
CDS494391494560
CDS494643494687
CDS495003495156
CDS495427495556
CDS496190496275
CDS496514496683
CDS496810496854
CDS497144497275
CDS497800497924
CDS498758498844
CDS499296499444
CDS499483499550
CDS500105500235

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000713signal peptide processing,
tRNA modification,
tRNA_guanylyltransferase_activity
F-actin capping protein complex,
actin cytoskeleton organization,
WASH_complex

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04446.11Thg1157287
PF14413.5Thg1C290334
PF04446.11Thg1379482
PF14413.5Thg1C486527
PF14413.5Thg1C539613

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0006400tRNA modification
GO:0008193tRNA guanylyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.