PH01000272G0880's details annotation
1.Annotation
ICBR annotation: growth regulator related protein, putative, expressed
Blast result AT1G76270 : 2.00E-177
Blast annotation: O-fucosyltransferase family protein
2.Location
Scaffold: PH01000272
Strand: -
| Region | Start | End |
| gene | 587506 | 592169 |
| mRNA | 587506 | 592169 |
| exon | 587506 | 588578 |
| exon | 588704 | 589035 |
| exon | 589106 | 589245 |
| exon | 589349 | 589469 |
| exon | 589571 | 589754 |
| exon | 589826 | 589914 |
| exon | 590686 | 590762 |
| exon | 590887 | 590977 |
| exon | 591066 | 591125 |
| exon | 591270 | 592169 |
| CDS | 588164 | 588578 |
| CDS | 588704 | 589035 |
| CDS | 589106 | 589245 |
| CDS | 589349 | 589469 |
| CDS | 589571 | 589754 |
| CDS | 589826 | 589914 |
| CDS | 590686 | 590762 |
| CDS | 590887 | 590977 |
| CDS | 591066 | 591125 |
| CDS | 591270 | 591461 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10250.8 | O-FucT | 125 | 431 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.