PH01000274G0630's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G11010 : 4.10E-67
Blast annotation: Pre-mRNA cleavage complex II protein family
2.Location
Scaffold: PH01000274
Strand: -
| Region | Start | End |
| gene | 430861 | 437368 |
| mRNA | 430861 | 437368 |
| exon | 430861 | 431515 |
| exon | 433267 | 433334 |
| exon | 433384 | 433451 |
| exon | 433978 | 434158 |
| exon | 434806 | 434983 |
| exon | 435094 | 435245 |
| exon | 436311 | 436344 |
| exon | 436449 | 436546 |
| exon | 436628 | 437368 |
| CDS | 431304 | 431515 |
| CDS | 433267 | 433334 |
| CDS | 433384 | 433451 |
| CDS | 433978 | 434158 |
| CDS | 434806 | 434983 |
| CDS | 435094 | 435245 |
| CDS | 436311 | 436344 |
| CDS | 436449 | 436546 |
| CDS | 436628 | 436818 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16575.4 | CLP1_P | 44 | 238 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.