PH01000274G0820's details annotation
1.Annotation
ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed
Blast result AT5G45910 : 7.50E-85
Blast annotation: GDSL-like Lipase/Acylhydrolase superfamily protein
2.Location
Scaffold: PH01000274
Strand: -
| Region | Start | End |
| gene | 565966 | 568931 |
| mRNA | 565966 | 568931 |
| exon | 565966 | 566388 |
| exon | 567502 | 567775 |
| exon | 567975 | 568123 |
| exon | 568250 | 568456 |
| exon | 568572 | 568931 |
| CDS | 566168 | 566388 |
| CDS | 567502 | 567775 |
| CDS | 567975 | 568123 |
| CDS | 568250 | 568456 |
| CDS | 568572 | 568794 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000644 | NAC Transcription_Regulator(from PlantTFDB) regulation of transcription, DNA-dependent, Trihelix Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00657.21 | Lipase_GDSL | 27 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006629 | lipid metabolic process |
| GO:0016787 | hydrolase activity |
| GO:0016788 | hydrolase activity, acting on ester bonds |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.