PH01000277G0160's details annotation
1.Annotation
ICBR annotation: coiled-coil domain-containing protein, putative, expressed
Blast result AT1G25682 : 5.40E-17
Blast annotation: Family of unknown function (DUF572)
2.Location
Scaffold: PH01000277
Strand: -
| Region | Start | End |
| gene | 184873 | 189357 |
| mRNA | 184873 | 189357 |
| exon | 184873 | 185950 |
| exon | 186058 | 186166 |
| exon | 186786 | 186877 |
| exon | 188189 | 188266 |
| exon | 188390 | 188469 |
| exon | 188579 | 189357 |
| CDS | 185936 | 185950 |
| CDS | 186058 | 186166 |
| CDS | 186786 | 186877 |
| CDS | 188189 | 188266 |
| CDS | 188390 | 188469 |
| CDS | 188579 | 188594 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04502.12 | DUF572 | 86 | 125 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.