PH01000277G0730's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT3G15090 : 7.70E-86
Blast annotation: GroES-like zinc-binding alcohol dehydrogenase family protein
2.Location
Scaffold: PH01000277
Strand: +
| Region | Start | End |
| gene | 636036 | 642066 |
| mRNA | 636036 | 642066 |
| exon | 636036 | 639846 |
| exon | 640041 | 640268 |
| exon | 640616 | 640689 |
| exon | 641248 | 641407 |
| exon | 641664 | 642066 |
| CDS | 639622 | 639846 |
| CDS | 640041 | 640268 |
| CDS | 640616 | 640689 |
| CDS | 641248 | 641407 |
| CDS | 641664 | 641789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001784 | RLK-Pelle_RLCK-V (from iTAK) COPI vesicle coat, membrane coat, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 57 | 119 |
| PF00107.25 | ADH_zinc_N | 187 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.