Annotation of co-expression genes

PH01000280G0520's details annotation

1.Annotation

ICBR annotation: tetratricopeptide-like helical, putative

Blast result AT4G02750 : 4.00E-147
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01000280
Strand: +

RegionStartEnd
gene354181358043
mRNA354181358043
exon354181358043
CDS354378356435

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12854.6PPR_193121
PF01535.19PPR127157
PF01535.19PPR158186
PF01535.19PPR189213
PF01535.19PPR221249
PF01535.19PPR251279
PF01535.19PPR282310
PF01535.19PPR313342
PF01535.19PPR344370
PF01535.19PPR444469
PF13041.5PPR_2470517

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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