PH01000280G1020's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT2G45200 : 1.40E-95
Blast annotation: golgi snare 12
2.Location
Scaffold: PH01000280
Strand: -
| Region | Start | End |
| gene | 634965 | 637629 |
| mRNA | 634965 | 637629 |
| exon | 634965 | 635140 |
| exon | 635308 | 635437 |
| exon | 635909 | 635980 |
| exon | 636065 | 636154 |
| exon | 636235 | 637629 |
| CDS | 635043 | 635140 |
| CDS | 635308 | 635437 |
| CDS | 635909 | 635980 |
| CDS | 636065 | 636154 |
| CDS | 636235 | 636597 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12352.7 | V-SNARE_C | 161 | 225 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | golgi SNAP receptor complex member 1 | ko04130 | K08495 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0005801 | cis-Golgi network |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.