PH01000284G1150's details annotation
1.Annotation
ICBR annotation: Homeobox domain containing protein, expressed
Blast result AT3G19510 : 1.40E-42
Blast annotation: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
2.Location
Scaffold: PH01000284
Strand: -
| Region | Start | End |
| gene | 700843 | 712402 |
| mRNA | 700843 | 712402 |
| exon | 700843 | 701216 |
| exon | 701445 | 701914 |
| exon | 702021 | 702110 |
| exon | 702260 | 702550 |
| exon | 705130 | 705753 |
| exon | 705876 | 705988 |
| exon | 706620 | 706965 |
| exon | 707445 | 707548 |
| exon | 711498 | 712402 |
| CDS | 701039 | 701216 |
| CDS | 701445 | 701914 |
| CDS | 702021 | 702110 |
| CDS | 702260 | 702550 |
| CDS | 705130 | 705753 |
| CDS | 705876 | 705988 |
| CDS | 706620 | 706965 |
| CDS | 707445 | 707548 |
| CDS | 711498 | 711690 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-other |
| Transcription_Regulator(from PlantTFDB) | HB-other |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05920.10 | Homeobox_KN | 565 | 596 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.