PH01000288G0160's details annotation
1.Annotation
ICBR annotation: ribose-5-phosphate isomerase A, putative, expressed
Blast result AT3G04790 : 8.30E-99
Blast annotation: Ribose 5-phosphate isomerase, type A protein
2.Location
Scaffold: PH01000288
Strand: +
| Region | Start | End |
| gene | 94093 | 96169 |
| mRNA | 94093 | 96169 |
| exon | 94093 | 94640 |
| exon | 95643 | 96169 |
| CDS | 94245 | 94640 |
| CDS | 95643 | 96080 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06026.13 | Rib_5-P_isom_A | 95 | 271 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose phosphate pathway | ribose 5-phosphate isomerase A [EC:5.3.1.6] | ko00030 | K01807 |
| Carbon fixation in photosynthetic organisms | ribose 5-phosphate isomerase A [EC:5.3.1.6] | ko00710 | K01807 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004751 | ribose-5-phosphate isomerase activity |
| GO:0009052 | pentose-phosphate shunt, non-oxidative branch |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.