PH01000288G0570's details annotation
1.Annotation
ICBR annotation: LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
Blast result AT3G22600 : 9.80E-30
Blast annotation: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
2.Location
Scaffold: PH01000288
Strand: -
| Region | Start | End |
| gene | 385762 | 388242 |
| mRNA | 385762 | 388242 |
| exon | 385762 | 386134 |
| exon | 386216 | 386341 |
| exon | 386379 | 388242 |
| CDS | 386019 | 386134 |
| CDS | 386216 | 386341 |
| CDS | 386379 | 386706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000361 | GH3 Glycoside_Hydrolases integral to membrane, lipid transport, Cyanoamino_acid_metabolism Phenylpropanoid_biosynthesis Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14368.5 | LTP_2 | 12 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006869 | lipid transport |
| GO:0008289 | lipid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.