PH01000289G0280's details annotation
1.Annotation
ICBR annotation: FabA-like domain containing protein, expressed
Blast result AT2G22230 : 3.30E-77
Blast annotation: Thioesterase superfamily protein
2.Location
Scaffold: PH01000289
Strand: +
| Region | Start | End |
| gene | 180544 | 184127 |
| mRNA | 180544 | 184127 |
| exon | 180544 | 181678 |
| exon | 181781 | 181841 |
| exon | 182730 | 182874 |
| exon | 183613 | 184127 |
| CDS | 181507 | 181678 |
| CDS | 181781 | 181841 |
| CDS | 182730 | 182874 |
| CDS | 183613 | 183864 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000599 | mRNA_cis_splicing,_via_spliceosome nuclear_cap_binding_complex RNA_cap_binding hydro-lyase activity, fatty acid biosynthetic process, Biotin_metabolism Fatty_acid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07977.12 | FabA | 83 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fatty acid biosynthesis | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] | ko00061 | K02372 |
| Biotin metabolism | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] | ko00780 | K02372 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016836 | hydro-lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.