Annotation of co-expression genes

PH01000291G0150's details annotation

1.Annotation

ICBR annotation: kinesin-4, putative, expressed

Blast result AT3G10310 : 6.00E-145
Blast annotation: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain

2.Location

Scaffold: PH01000291
Strand: +

RegionStartEnd
gene117415125486
mRNA117415125486
exon117415119520
exon120174120460
exon120542120797
exon121016121098
exon121208121261
exon123295123357
exon123694123775
exon123888123983
exon124055124225
exon124311124394
exon124798124954
exon125048125486
CDS119454119520
CDS120174120460
CDS120542120797
CDS121016121098
CDS121208121261
CDS123295123357
CDS123694123775
CDS123888123983
CDS124055124225
CDS124311124394
CDS124798124954
CDS125048125306

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00307.30CH25141
PF16796.4Microtub_bd314414
PF00225.22Kinesin422551

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.