PH01000291G0960's details annotation
1.Annotation
ICBR annotation: dnaJ domain containing protein, expressed
Blast result AT2G20560 : 1.80E-60
Blast annotation: DNAJ heat shock family protein
2.Location
Scaffold: PH01000291
Strand: -
| Region | Start | End |
| gene | 648475 | 653782 |
| mRNA | 648475 | 653782 |
| exon | 648475 | 649021 |
| exon | 649374 | 649410 |
| exon | 649702 | 649897 |
| exon | 650559 | 650691 |
| exon | 652046 | 652485 |
| exon | 653322 | 653782 |
| CDS | 648583 | 649021 |
| CDS | 649374 | 649410 |
| CDS | 649702 | 649897 |
| CDS | 650559 | 650691 |
| CDS | 652046 | 652485 |
| CDS | 653322 | 653483 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000504 | cytoplasm, microtubule associated complex, Pyruvate_metabolism Fatty_acid_biosynthesis Glycine,_serine_and_threonine_metabolism Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001049 | microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process, |
| coexpression network | CFinderM001450 | tRNA processing, |
| coexpression network | CFinderM001740 | Glycine,_serine_and_threonine_metabolism aminomethyltransferase activity, aspartate kinase activity, Biotin_metabolism Lysine_biosynthesis glycine catabolic process, cellular amino acid biosynthetic process, Fatty_acid_biosynthesis Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 4 | 66 |
| PF01556.17 | DnaJ_C | 171 | 451 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006457 | protein folding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.