PH01000293G0490's details annotation
1.Annotation
ICBR annotation: nuclear matrix protein 1, putative, expressed
Blast result AT5G17620 : 8.00E-130
Blast annotation: -
2.Location
Scaffold: PH01000293
Strand: +
| Region | Start | End |
| gene | 296614 | 300817 |
| mRNA | 296614 | 300817 |
| exon | 296614 | 296958 |
| exon | 297100 | 297185 |
| exon | 297284 | 297345 |
| exon | 297494 | 297585 |
| exon | 297835 | 297960 |
| exon | 298005 | 298043 |
| exon | 298145 | 298235 |
| exon | 298681 | 298848 |
| exon | 299005 | 299103 |
| exon | 299873 | 300817 |
| CDS | 296825 | 296958 |
| CDS | 297100 | 297185 |
| CDS | 297284 | 297345 |
| CDS | 297494 | 297585 |
| CDS | 297835 | 297960 |
| CDS | 298005 | 298043 |
| CDS | 298145 | 298235 |
| CDS | 298681 | 298848 |
| CDS | 299005 | 299103 |
| CDS | 299873 | 300061 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06694.10 | Plant_NMP1 | 6 | 213 |
| PF06694.10 | Plant_NMP1 | 228 | 356 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.