PH01000293G0830's details annotation
1.Annotation
ICBR annotation: COV1, putative, expressed
Blast result AT1G43130 : 6.00E-103
Blast annotation: like COV 2
2.Location
Scaffold: PH01000293
Strand: +
| Region | Start | End |
| gene | 504622 | 509626 |
| mRNA | 504622 | 509626 |
| exon | 504622 | 505992 |
| exon | 506351 | 506436 |
| exon | 507242 | 507351 |
| exon | 507777 | 507944 |
| exon | 508422 | 508519 |
| exon | 508650 | 508776 |
| exon | 508962 | 509626 |
| CDS | 505873 | 505992 |
| CDS | 506351 | 506436 |
| CDS | 507242 | 507351 |
| CDS | 507777 | 507944 |
| CDS | 508422 | 508519 |
| CDS | 508650 | 508776 |
| CDS | 508962 | 509065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001563 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04367.12 | DUF502 | 100 | 200 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.