PH01000295G1260's details annotation
1.Annotation
ICBR annotation: domain of unknown function, DUF250 domain containing protein, expressed
Blast result AT5G25400 : 6.20E-50
Blast annotation: Nucleotide-sugar transporter family protein
2.Location
Scaffold: PH01000295
Strand: -
| Region | Start | End |
| gene | 809706 | 810795 |
| mRNA | 809706 | 810795 |
| exon | 809706 | 810318 |
| exon | 810416 | 810795 |
| CDS | 809835 | 810318 |
| CDS | 810416 | 810483 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000706 | C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03151.15 | TPT | 29 | 141 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.