PH01000296G0140's details annotation
1.Annotation
ICBR annotation: wound-induced protein WI12, putative
Blast result AT3G10985 : 6.50E-17
Blast annotation: senescence associated gene 20
2.Location
Scaffold: PH01000296
Strand: -
| Region | Start | End |
| gene | 89807 | 90565 |
| mRNA | 89807 | 90565 |
| exon | 89807 | 90565 |
| CDS | 89973 | 90488 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000390 | carbohydrate metabolic process, GH79 Glycoside_Hydrolases GH35 Glycoside_Hydrolases hydrolase activity, hydrolyzing O-glycosyl compounds, hydrolase activity, acting on glycosyl bonds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07107.10 | WI12 | 67 | 171 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.