Annotation of co-expression genes

PH01000298G0450's details annotation

1.Annotation

ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed

Blast result AT5G42940 : 4.90E-30
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01000298
Strand: -

RegionStartEnd
gene328586337318
mRNA328586337318
exon328586328774
exon329065329220
exon329327329425
exon329734329888
exon330229330387
exon330636330696
exon331136331248
exon331821331933
exon332601332862
exon333400333560
exon333847334081
exon334230334554
exon335265335593
exon335853337318
CDS328628328774
CDS329065329220
CDS329327329425
CDS329734329888
CDS330229330387
CDS330636330696
CDS331136331248
CDS331821331933
CDS332601332862
CDS333400333560
CDS333847334081
CDS334230334554
CDS335265335593
CDS335853336669

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13639.5zf-RING_29901032

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.