PH01000300G0750's details annotation
1.Annotation
ICBR annotation: SART-1 family protein, putative, expressed
Blast result AT5G16780 : 4.00E-158
Blast annotation: SART-1 family
2.Location
Scaffold: PH01000300
Strand: +
| Region | Start | End |
| gene | 464979 | 472045 |
| mRNA | 464979 | 472045 |
| exon | 464979 | 465719 |
| exon | 467315 | 467480 |
| exon | 467567 | 467630 |
| exon | 467792 | 467905 |
| exon | 467984 | 468077 |
| exon | 468166 | 468232 |
| exon | 468310 | 468369 |
| exon | 468500 | 469109 |
| exon | 469216 | 469571 |
| exon | 469872 | 470092 |
| exon | 470735 | 472045 |
| CDS | 465178 | 465719 |
| CDS | 467315 | 467480 |
| CDS | 467567 | 467630 |
| CDS | 467792 | 467905 |
| CDS | 467984 | 468077 |
| CDS | 468166 | 468232 |
| CDS | 468310 | 468369 |
| CDS | 468500 | 469109 |
| CDS | 469216 | 469571 |
| CDS | 469872 | 470092 |
| CDS | 470735 | 470849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000229 | GT2 GlycosylTransferases NuA4_histone_acetyltransferase_complex histone_H2A_acetylation protein homooligomerization, histone_H4_acetylation chromatin remodeling, negative_regulation_of_transcription,_DNA-templated RNA modification, pseudouridine synthesis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03343.12 | SART-1 | 145 | 661 |
| PF03343.12 | SART-1 | 679 | 725 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | U4/U6.U5 tri-snRNP-associated protein 1 | ko03041 | K11984 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.