PH01000309G0340's details annotation
1.Annotation
ICBR annotation: sorting nexin 1, putative, expressed
Blast result AT5G06140 : 3.00E-102
Blast annotation: sorting nexin 1
2.Location
Scaffold: PH01000309
Strand: -
| Region | Start | End |
| gene | 241106 | 248583 |
| mRNA | 241106 | 248583 |
| exon | 241106 | 241550 |
| exon | 242361 | 242494 |
| exon | 242817 | 242976 |
| exon | 243748 | 243904 |
| exon | 244034 | 244164 |
| exon | 244313 | 244384 |
| exon | 244935 | 245068 |
| exon | 245213 | 245348 |
| exon | 246177 | 246311 |
| exon | 246603 | 246643 |
| exon | 247151 | 248583 |
| CDS | 241341 | 241550 |
| CDS | 242361 | 242494 |
| CDS | 242817 | 242976 |
| CDS | 243748 | 243904 |
| CDS | 244034 | 244164 |
| CDS | 244313 | 244384 |
| CDS | 244935 | 245068 |
| CDS | 245213 | 245348 |
| CDS | 246177 | 246311 |
| CDS | 246603 | 246643 |
| CDS | 247151 | 247451 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00787.23 | PX | 134 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0007154 | cell communication |
| GO:0035091 | phosphatidylinositol binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.