PH01000312G0930's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G27690 : 1.30E-46
Blast annotation: Protein of unknown function (DUF620)
2.Location
Scaffold: PH01000312
Strand: +
| Region | Start | End |
| gene | 669663 | 671626 |
| mRNA | 669663 | 671626 |
| exon | 669663 | 671626 |
| CDS | 670484 | 671005 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000050 | protein complex, microtubule, structural constituent of cytoskeleton, microtubule-based process, protein polymerization, Phagosome GTP_catabolic_process glycine cleavage complex, glycine decarboxylation via glycine cleavage system, GTPase activity, GTP binding, glycine catabolic process, Glyoxylate_and_dicarboxylate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04788.11 | DUF620 | 1 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.