Annotation of co-expression genes

PH01000316G0900's details annotation

1.Annotation

ICBR annotation: copine, putative, expressed

Blast result AT5G14420 : 3.00E-155
Blast annotation: RING domain ligase2

2.Location

Scaffold: PH01000316
Strand: +

RegionStartEnd
gene576260582397
mRNA576260582397
exon576260577772
exon578717578887
exon579357579422
exon579453579537
exon579632579772
exon579857579970
exon580068580165
exon580648580727
exon580893580998
exon581139581266
exon581376581580
exon581699581755
exon582035582397
CDS577464577772
CDS578717578887
CDS579357579422
CDS579453579537
CDS579632579772
CDS579857579970
CDS580068580165
CDS580648580727
CDS580893580998
CDS581139581266
CDS581376581580
CDS581699581755
CDS582035582304

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07002.15Copine140354
PF13920.5zf-C3HC4_3421462

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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