PH01000317G0580's details annotation
1.Annotation
ICBR annotation: nodulin MtN3 family protein, putative, expressed
Blast result AT1G21460 : 8.80E-85
Blast annotation: Nodulin MtN3 family protein
2.Location
Scaffold: PH01000317
Strand: -
| Region | Start | End |
| gene | 356393 | 361206 |
| mRNA | 356393 | 361206 |
| exon | 356393 | 356642 |
| exon | 357234 | 357353 |
| exon | 357439 | 357718 |
| exon | 360127 | 360222 |
| exon | 360779 | 360815 |
| exon | 360993 | 361206 |
| CDS | 356424 | 356642 |
| CDS | 357234 | 357353 |
| CDS | 357439 | 357718 |
| CDS | 360127 | 360222 |
| CDS | 360779 | 360815 |
| CDS | 360993 | 361029 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03083.15 | MtN3_slv | 8 | 95 |
| PF03083.15 | MtN3_slv | 131 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.