PH01000318G0690's details annotation
1.Annotation
ICBR annotation: YL1 nuclear protein C-terminal domain containing protein, expressed
Blast result AT4G38495 : 2.60E-22
Blast annotation: -
2.Location
Scaffold: PH01000318
Strand: -
| Region | Start | End |
| gene | 543926 | 547084 |
| mRNA | 543926 | 547084 |
| exon | 543926 | 544219 |
| exon | 544778 | 544845 |
| exon | 546478 | 547084 |
| CDS | 544190 | 544219 |
| CDS | 544778 | 544845 |
| CDS | 546478 | 546652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001093 | Rcd1-like Transcription_Regulator(from iTAK) phagocytosis, cytoskeleton, protein dephosphorylation, protein serine/threonine phosphatase activity, |
| coexpression network | CFinderM001178 | WASH_complex eukaryotic translation elongation factor 1 complex, phagocytosis, cytoskeleton, nucleoside-triphosphatase activity, translational elongation, translation elongation factor activity, nucleotide binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.