PH01000320G0200's details annotation
1.Annotation
ICBR annotation: mediator of RNA polymerase II transcription subunit 22, putative, expressed
Blast result AT1G07950 : 5.70E-20
Blast annotation: Surfeit locus protein 5 subunit 22 of Mediator complex
2.Location
Scaffold: PH01000320
Strand: +
| Region | Start | End |
| gene | 163690 | 169500 |
| mRNA | 163690 | 169500 |
| exon | 163690 | 164824 |
| exon | 165881 | 165949 |
| exon | 166426 | 166604 |
| exon | 166686 | 166751 |
| exon | 167086 | 167277 |
| exon | 167818 | 169500 |
| CDS | 164746 | 164824 |
| CDS | 165881 | 165949 |
| CDS | 166426 | 166604 |
| CDS | 166686 | 166751 |
| CDS | 167086 | 167277 |
| CDS | 167818 | 168051 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06179.11 | Med22 | 88 | 131 |
| PF06179.11 | Med22 | 185 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001104 | RNA polymerase II transcription cofactor activity |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0016592 | mediator complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.