PH01000321G0230's details annotation
1.Annotation
ICBR annotation: actin-depolymerizing factor, putative, expressed
Blast result AT2G31200 : 1.40E-45
Blast annotation: actin depolymerizing factor 6
2.Location
Scaffold: PH01000321
Strand: -
| Region | Start | End |
| gene | 161688 | 166497 |
| mRNA | 161688 | 166497 |
| exon | 161688 | 162961 |
| exon | 163614 | 163882 |
| exon | 166096 | 166497 |
| CDS | 162805 | 162961 |
| CDS | 163614 | 163882 |
| CDS | 166096 | 166194 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00241.19 | Cofilin_ADF | 48 | 169 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003779 | actin binding |
| GO:0005622 | intracellular |
| GO:0015629 | actin cytoskeleton |
| GO:0030042 | actin filament depolymerization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.