PH01000327G0410's details annotation
1.Annotation
ICBR annotation: BRE, putative, expressed
Blast result AT5G42470 : 1.30E-98
Blast annotation: -
2.Location
Scaffold: PH01000327
Strand: +
| Region | Start | End |
| gene | 280672 | 287201 |
| mRNA | 280672 | 287201 |
| exon | 280672 | 281464 |
| exon | 281560 | 281647 |
| exon | 281742 | 281922 |
| exon | 282310 | 282400 |
| exon | 282890 | 282925 |
| exon | 283009 | 283107 |
| exon | 284042 | 284169 |
| exon | 284341 | 284389 |
| exon | 285486 | 285575 |
| exon | 286297 | 286362 |
| exon | 286890 | 287026 |
| exon | 287107 | 287201 |
| CDS | 281351 | 281464 |
| CDS | 281560 | 281647 |
| CDS | 281742 | 281922 |
| CDS | 282310 | 282400 |
| CDS | 282890 | 282925 |
| CDS | 283009 | 283107 |
| CDS | 284042 | 284169 |
| CDS | 284341 | 284389 |
| CDS | 285486 | 285575 |
| CDS | 286297 | 286362 |
| CDS | 286890 | 287026 |
| CDS | 287107 | 287176 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06113.11 | BRE | 35 | 284 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.