PH01000330G0920's details annotation
1.Annotation
ICBR annotation: myosin, putative, expressed
Blast result AT5G43900 : 0
Blast annotation: myosin 2
2.Location
Scaffold: PH01000330
Strand: +
| Region | Start | End |
| gene | 710442 | 724585 |
| mRNA | 710442 | 724585 |
| exon | 710442 | 711152 |
| exon | 711422 | 711496 |
| exon | 711860 | 711909 |
| exon | 712782 | 712839 |
| exon | 712946 | 713047 |
| exon | 713370 | 713407 |
| exon | 713492 | 713618 |
| exon | 714580 | 714747 |
| exon | 714843 | 714974 |
| exon | 718458 | 718567 |
| exon | 718647 | 718707 |
| exon | 719332 | 719509 |
| exon | 719603 | 719808 |
| exon | 721165 | 721284 |
| exon | 722262 | 722360 |
| exon | 723828 | 724037 |
| exon | 724440 | 724585 |
| CDS | 711135 | 711152 |
| CDS | 711422 | 711496 |
| CDS | 711860 | 711909 |
| CDS | 712782 | 712839 |
| CDS | 712946 | 713047 |
| CDS | 713370 | 713407 |
| CDS | 713492 | 713618 |
| CDS | 714580 | 714747 |
| CDS | 714843 | 714974 |
| CDS | 718458 | 718567 |
| CDS | 718647 | 718707 |
| CDS | 719332 | 719509 |
| CDS | 719603 | 719808 |
| CDS | 721165 | 721284 |
| CDS | 722262 | 722360 |
| CDS | 723828 | 724037 |
| CDS | 724440 | 724574 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001662 | myosin complex, motor activity, Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis Arp2/3_protein_complex cytoskeleton, Arp2/3_complex-mediated_actin_nucleation regulation of actin filament polymerization, ATP binding, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00063.20 | Myosin_head | 26 | 322 |
| PF00612.26 | IQ | 340 | 357 |
| PF00612.26 | IQ | 363 | 380 |
| PF00612.26 | IQ | 387 | 405 |
| PF00612.26 | IQ | 411 | 428 |
| PF00612.26 | IQ | 434 | 453 |
| PF00612.26 | IQ | 458 | 475 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003774 | motor activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0016459 | myosin complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.