PH01000338G0460's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT1G56130 : 7.00E-134
Blast annotation: Leucine-rich repeat transmembrane protein kinase
2.Location
Scaffold: PH01000338
Strand: -
| Region | Start | End |
| gene | 353138 | 359016 |
| mRNA | 353138 | 359016 |
| exon | 353138 | 353454 |
| exon | 353545 | 353924 |
| exon | 354028 | 354092 |
| exon | 354204 | 354248 |
| exon | 354373 | 354438 |
| exon | 354695 | 354766 |
| exon | 354911 | 354985 |
| exon | 355232 | 355303 |
| exon | 355519 | 355590 |
| exon | 355686 | 355757 |
| exon | 355908 | 355979 |
| exon | 356518 | 356589 |
| exon | 357465 | 357536 |
| exon | 357663 | 357849 |
| exon | 357964 | 359016 |
| CDS | 353239 | 353454 |
| CDS | 353545 | 353924 |
| CDS | 354028 | 354092 |
| CDS | 354204 | 354248 |
| CDS | 354373 | 354438 |
| CDS | 354695 | 354766 |
| CDS | 354911 | 354985 |
| CDS | 355232 | 355303 |
| CDS | 355519 | 355590 |
| CDS | 355686 | 355757 |
| CDS | 355908 | 355979 |
| CDS | 356518 | 356589 |
| CDS | 357465 | 357536 |
| CDS | 357663 | 357849 |
| CDS | 357964 | 358081 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13855.5 | LRR_8 | 242 | 302 |
| PF11721.7 | Malectin | 356 | 542 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.