PH01000343G0070's details annotation
1.Annotation
ICBR annotation: ras-related protein, putative, expressed
Blast result AT5G47200 : 2.80E-73
Blast annotation: RAB GTPase homolog 1A
2.Location
Scaffold: PH01000343
Strand: +
| Region | Start | End |
| gene | 39633 | 54343 |
| mRNA | 39633 | 54343 |
| exon | 39633 | 41551 |
| exon | 46591 | 46663 |
| exon | 47012 | 47059 |
| exon | 48139 | 48210 |
| exon | 48305 | 48460 |
| exon | 48577 | 48680 |
| exon | 53897 | 54343 |
| CDS | 41397 | 41551 |
| CDS | 46591 | 46663 |
| CDS | 47012 | 47059 |
| CDS | 48139 | 48210 |
| CDS | 48305 | 48460 |
| CDS | 48577 | 48680 |
| CDS | 53897 | 54008 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001563 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00071.21 | Ras | 57 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0006184 | GTP catabolic process |
| GO:0006886 | intracellular protein transport |
| GO:0006913 | nucleocytoplasmic transport |
| GO:0007165 | signal transduction |
| GO:0007264 | small GTPase mediated signal transduction |
| GO:0015031 | protein transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.