PH01000343G0240's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
Blast result AT4G17510 : 1.10E-78
Blast annotation: ubiquitin C-terminal hydrolase 3
2.Location
Scaffold: PH01000343
Strand: +
| Region | Start | End |
| gene | 173576 | 176501 |
| mRNA | 173576 | 176501 |
| exon | 173576 | 174880 |
| exon | 175005 | 175136 |
| exon | 176294 | 176501 |
| CDS | 174830 | 174880 |
| CDS | 175005 | 175136 |
| CDS | 176294 | 176320 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001712 | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), Aminoacyl-tRNA_biosynthesis ATP_catabolic_process valyl-tRNA aminoacylation, ATP biosynthetic process, ATP metabolic process, G-protein coupled receptor signaling pathway, G-protein_beta/gamma-subunit_complex_binding guanyl nucleotide binding, valine-tRNA ligase activity, aminoacyl-tRNA_editing_activity proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01088.20 | Peptidase_C12 | 5 | 211 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0005622 | intracellular |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.